Scaffold Ga0209337_1048015

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1048015
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2233
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F002151	Metagenome / Metatranscriptome	589	Y
F006008	Metagenome / Metatranscriptome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10480151	F006008	AGGAG	MPLVKKRIFLAAGATSDQVLAGTTYEYVDAGTQLRVAAAVD
Ga0209337_10480153	F002151	N/A	MEYVNYIAFGCSIVAFVLSLIASARVGQFIKATKDTDWETLANLTGDIAALKRTCQTLNNRLNGMNKAVVPQEQILQQMLEYNNVEQIKRGG
Ga0209337_10480155	F000754	N/A	TVNNAEFSRNASVSKLVDGEPFGASENSTYTMNNMVTTGAVRNRPIVTFTNGTAGTRTIDVAIFIGN