Scaffold Ga0209337_1034480

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1034480
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2767
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018403	Metagenome / Metatranscriptome	235	Y
F092741	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10344802	F018403	AGG	MNKDTKKVVDSSKQEQLTMVDNIVIGNSELGNKRIVLTTMIINTIKANKVELKYTDKITSSDINFNQLNKVSNSNVRGFVDTYKKWLGVDTLDTWSSSTDTGKERMRILKDSFWVALPLIKAECLQKNKGQQFTGNKNSEVFIEGEFAKKYSDKNPKKLPVVSMKFADLKRASQNYYADGSTNLSTNETSGTDNSFVVGIKKMTRTINANKSDLVLKKEQAGTENAIRNLEIACTQWSLEFNKVKQSVMTPEQLAKRKSA
Ga0209337_10344805	F092741	GGAG	MSEKQICFLCKGNGFRTIYEDTTRTNVVLTQCSNCNSKGEAFILNQEKHDKLKAEFERDYKPYLPTLADYIRQQN