Scaffold Ga0209337_1019499

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1019499
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3984
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F049292	Metagenome	147	Y
F079342	Metagenome	116	Y
F086306	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101949910	F079342	N/A	MSLDNARKQMARARKELELARINDTHYRGVEYTPISATHETHGTFVYRGRTYTK
Ga0209337_10194994	F086306	N/A	MIEPFVPIFVAVGTGFAVLTSRIYGRISLLDTRLDKIELRMVEEYINKADFSSAITRMEGQLLRMEDKLDILANKKCN
Ga0209337_10194997	F049292	N/A	MYFVVGPVLALLISLKFTQQQQAKHKLEYDALLAKVELLENRSAETETIILKNVMSTVMPIAKAVNKLNQEVGL
Ga0209337_10194998	F039871	AGGA	MIELRKFFEAYEGSPHQLAAIDQLADEMPDELLDKFCAWVECFEVDGEVQPLVEYSAKGYIIKEPWRYT