Scaffold Ga0209337_1010357

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1010357
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5897
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F038864	Metagenome	165	Y
F057680	Metagenome / Metatranscriptome	136	Y
F061291	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101035714	F061291	N/A	MKTKEELERAIVLHEDALESSKHSVIVDTQDLEQAKRDLASFNKPELTGSQLDDIQEAVESAVGNFDFDDANNYDKEFELDYDGRVQLSHLDFTNAQELIEAVVEKVIKLFVEVEDKDEDND
Ga0209337_101035715	F057680	N/A	MTKLIDKIKPEVLRALDRHCKPEYPTSHRMIIASLESVLFYRDLTIEQVSQLRIFLPNEFKPTTSLDWGYGDNILQKKYQL
Ga0209337_10103576	F000126	N/A	MGRSNNGDIDHNNNGSKMRDFKITKKDGEWYNTIVTDSYGKIYQNWYETASEASDWVMYIWEKEDWFNSVNSEELLYKAIQECKAIDKEKGIGSIL
Ga0209337_10103579	F038864	N/A	MKIDKNLIVSALEIYKAFLVKRDISEHDESLELLIKVNEQIKLVKTLKTNYKLNTNEDG