NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209337_1010357

Scaffold Ga0209337_1010357


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1010357 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5897
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F038864Metagenome165Y
F057680Metagenome / Metatranscriptome136Y
F061291Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_101035714F061291N/AMKTKEELERAIVLHEDALESSKHSVIVDTQDLEQAKRDLASFNKPELTGSQLDDIQEAVESAVGNFDFDDANNYDKEFELDYDGRVQLSHLDFTNAQELIEAVVEKVIKLFVEVEDKDEDND
Ga0209337_101035715F057680N/AMTKLIDKIKPEVLRALDRHCKPEYPTSHRMIIASLESVLFYRDLTIEQVSQLRIFLPNEFKPTTSLDWGYGDNILQKKYQL
Ga0209337_10103576F000126N/AMGRSNNGDIDHNNNGSKMRDFKITKKDGEWYNTIVTDSYGKIYQNWYETASEASDWVMYIWEKEDWFNSVNSEELLYKAIQECKAIDKEKGIGSIL
Ga0209337_10103579F038864N/AMKIDKNLIVSALEIYKAFLVKRDISEHDESLELLIKVNEQIKLVKTLKTNYKLNTNEDG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.