NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1009677

Scaffold Ga0209337_1009677


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1009677 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6164
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033590Metagenome / Metatranscriptome177Y
F033600Metagenome / Metatranscriptome177Y
F105495Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100967712F105495AGGMHQHQPREPRAIVGPNGVTVRPVLKTVKVGNEVRVEAHYTDPTTGQFITKIPVSVDKVDD
Ga0209337_10096777F033600N/AMMKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLADIAKSSPATYNKVKADLVPFPGDHAVEQLGSAFKSISDATYLLNQLFENPTVTSDEKTQVSVNKKLQKIQDLIKSVTDDLDHDGTNNS
Ga0209337_10096778F033590N/AMGKFENKFLSVLNEDEAPPVDAVNAAPSDDAQSFAGSLDQPENAGDFEDVQDNQPNTANELAQLQEWVGNIDEVIDYLNGGTDSVLGYLRTDNKTGTIFDGVSDATKSEILDICERLASLNQIFKNLYIEKHK

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