NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1008514

Scaffold Ga0209337_1008514


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1008514 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6663
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030569Metagenome185Y
F030896Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100851411F030896AGGAGGMKTSVINKNSGDYGKFTNVQYSKDLAFATGRWQDLVRNGEVTSLTVNDATVDAGITLVANYEYVSEWIANATSAIVLPAAIEGTFVAWQQNADGDEANAMTITAAGADTYEPYQEVHIGTGIPAQQDVSVAGDTILTITPAATNGGWGQVGSSFMFYCKNNGEWLVKVNGALKGTGATGTIAFSS
Ga0209337_10085149F030569N/AVRKPKCQHCDNLNPENWFFCRDCGKRASAPKFTTNSFVISEVGKRTDVEFNTISYDESINKMNKADKRWKGF

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