Scaffold Ga0209337_1008514

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1008514
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6663
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030569	Metagenome	185	Y
F030896	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100851411	F030896	AGGAGG	MKTSVINKNSGDYGKFTNVQYSKDLAFATGRWQDLVRNGEVTSLTVNDATVDAGITLVANYEYVSEWIANATSAIVLPAAIEGTFVAWQQNADGDEANAMTITAAGADTYEPYQEVHIGTGIPAQQDVSVAGDTILTITPAATNGGWGQVGSSFMFYCKNNGEWLVKVNGALKGTGATGTIAFSS
Ga0209337_10085149	F030569	N/A	VRKPKCQHCDNLNPENWFFCRDCGKRASAPKFTTNSFVISEVGKRTDVEFNTISYDESINKMNKADKRWKGF