Basic Information | |
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Taxon OID | 3300025168 Open in IMG/M |
Scaffold ID | Ga0209337_1008353 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6753 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (77.42%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018267 | Metagenome | 236 | Y |
F053549 | Metagenome | 141 | Y |
F064211 | Metagenome | 129 | Y |
F074152 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209337_100835323 | F074152 | GAG | MKLLTTFVLIGTVDSTDDFMATVEINMNPATEQVGYAVMPLTAFPCEIKEGDNFYILKLTKETIPVIMCKDKDELEDIKSNDGG |
Ga0209337_100835327 | F064211 | AGGAG | MMKAGQVKVWLDQGPAVLLQQCDVEGESIALDEVDDVVPTTEQGWIIHLLQTNELLTVHEETLHNGEMRV |
Ga0209337_10083537 | F018267 | AGGA | MKVGDLISFKPKSFGDDDWSNPGIVLDSYVSDDRQGGGWRDEIWIVWIDGGKYMVNERNDDVAYLTPSLQKGA |
Ga0209337_10083538 | F053549 | GAGG | MKIGDLVKWENVLNDSMDHHQEEHGIIIKMSRTGHETESAQVLLTDGETWWLDTQHLEVINESR |
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