NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209337_1004067

Scaffold Ga0209337_1004067


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1004067 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10188
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031873Metagenome181N
F046021Metagenome / Metatranscriptome152Y
F072747Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10040674F072747N/AMPDEITMKAINLLRDQDPNLDEMASMDKFLSHQKELAKMRDQYVSYSNHPQAEKMKKRLEVFEESSMAFTWVYFTMMQYKRELVLAQANEFEMANAVIELKHELDLLTKLNNDE
Ga0209337_10040675F031873N/AMNKKELELLEKFALKYNVECKPTKSETAFWDFTYEWDDRKFYCEMKQRNFTLDYAIENYAEGLLLEMHKYERILRRTKNEKAAQGLYFNFFSDDKALVFNLNKLKIDKWKWRTMPETTEFNKKKFVYKYVTFLDYSKGKMFYI
Ga0209337_10040676F046021N/AMKKLTPKYNDNKSIRLKIDKLLQQNASNVANSDTGSSLDIGGDKEVQWAWEKIQSKIKELDPVFYEIIKSR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.