Scaffold Ga0209337_1003459

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1003459
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11179
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F017933	Metagenome / Metatranscriptome	238	Y
F024225	Metagenome	207	Y
F029595	Metagenome	188	Y
F036475	Metagenome	170	N
F037479	Metagenome / Metatranscriptome	168	Y
F071255	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100345912	F012639	AGGAG	MSSNNSGLVLNCTAAFAAAAPVATVISCGMQTSPTTLAVTEMQVPLTENWIATDVYVLAVPALATPGAGFPTAVNPVISFDKNRGRQLVQTPPLSAMLITSNTRPRFSPAPIGFEGGSIIRMFATSTVLNAGAISNVQFSVAISIV
Ga0209337_100345913	F015413	N/A	MDSLSLEKQVNDLLTSKFEQPEFEQVNLKGIFGKDMLIGSAGTALSVQIGNIVGKFLPIGNLPGGTSSILAGIIIQKFGGNSSMLKKLSEGIIQGGIATAMTPFTSGLIPAQFSQEVKEVVQQEELNPLTKGVMW
Ga0209337_100345914	F029595	AGGA	MKCFESPSGLRDPMMWHKRQSIRDFARQKPMFSQLMQASKQCMKMNPHLKNDVKGAIQCETIHPQTLSSFSNFTFHTHPHDIPYPSQTDKNTTKQLKKKYLLIGVVPQNKTYVFSDSDNFEKSIATI
Ga0209337_100345918	F071255	AGCAG	MTDELKDFDDMKAQLKGLNSEEFSSLKGSINDLSSKMDLTQKEREGMFGISEFVEHLNTCDNDDCEIHKTQNTLNNNNYMKGFLLGAKFGKQKRS
Ga0209337_100345919	F024225	N/A	LKINFTTDKIDKKLYEKSILTYIYDHYLFNDYKKIMEQDKWQINVRTLADFKWNFYDKEIKNLSKKMPHGVTGDNVIECYVTDENNRMYYLQNMMVICHELSHMILKIYYPQIRGTLTYDDTWGKAGDERNFFSTEIHNRVYEGKTCKLTTWHNGNKFFFYGVDISDLTNQRNNDNGF
Ga0209337_100345920	F036475	GAG	MTPLQKLTLEILNDCMSIVEKRVSNPVYKKVIVSMGYPYAKKEILRTSDAELKKDMNLVYNRLKKHFNKKQLKDEIDFSNSISDIKVPEFISKQVGDYF
Ga0209337_10034596	F017933	AGTAG	MQEAIFGISIIGFTTMISIMVFNSRKNDTLIRDLCNRIAKLEGILQEHLK
Ga0209337_10034597	F037479	GAGG	MQFNGFYNFAGTGTATIIGVPNDNIPSFTENICANENMLFTGQIANLSRTLIHVSFQGFGSAQNFHKHDLRAYESIELYNIPIASIGIHVPSGLNVGIHGMGTIWTAEDADEYAIMGAKSGMFEKLPNSPDFDTDSYTRVNSNAAATVDLVVSTAVDDFAVYKLTASVAAANIIDIFWTDSANANIAFIGQLNFASSGTFVYDFPASMLRNPNRQGGKLRMTTSTNAVTVVDTIGHIVVAGQ