NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000568

Scaffold Ga0209337_1000568


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000568 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29887
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (44.74%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F017420Metagenome / Metatranscriptome241Y
F040325Metagenome / Metatranscriptome162Y
F047713Metagenome149N
F056888Metagenome / Metatranscriptome137N
F074009Metagenome120N
F081895Metagenome / Metatranscriptome114Y
F092887Metagenome107Y
F097509Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100056811F047713AGGAGMEIIGQGEVATLEIMKEMFGNSSEYMTQVKLSNMVTPEYLETFSDRQLKETIDIVVVTVFENLAIRVQDKHHASARMATIDNIQKNMLEWNGWKVIDIWHYECKELWKDKVNTKSRLELELAIKESSVD
Ga0209337_100056817F092887AGGAGGMVISRTVRPKKKILTSIVSVEKSRRVSTRNRIINTLGIYKRGLPLTEIQYKGDISSMGNLHHTIKFMVRAGEVDKIKCPHCNSTELYKLHI
Ga0209337_100056821F056888N/AMNVSEVLDIKGSHENSQKLVAGDKITIQSFKIKNVDEVGAEVVEIETTEGLRHSFGKTVIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEKEAEKTGRMMLCLSMFPPKN
Ga0209337_100056822F074009N/AMGTKIKGKYAGQCKICGSDWKVGEDIFYQKDPKAICSDKECFEEQGGKFTPYSGQGTLTNTAGWGKTPIITKLPEVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE
Ga0209337_100056823F007003N/AMLLMKLLIMIHYFSNIHYFTKNIDQKKYNDIIQRIIMINGHNGVSNSGYRAWQNFEENWTLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGSKVIYMFVNDVKNPFIIRQNVMPLGHELLHAIYQDAVGTFHITRKYDSPEGKAGTKSAAATVIVHDNWYGNKKTIKIWIRWGMIWLPITIPFIPIKEAKKQYEI
Ga0209337_100056824F040325N/AMARRKIGNSHTTICVSWEDKELFRKFASFVKKTRTGNLYESDAVLFSKMLNHFKENNAIGEISNTTYPSKV
Ga0209337_100056830F097509N/AMLKIDDINEEVYFQFRRSQMEAMHTERLGVIHVSDIIKPCMRNVIYRKTTPDTGMSTENTKSLYFGQAVHNNSQVAKDKKYHEMFFAYDYVRDESLTREEALKIPVDDPRHLDIIYGSADDVLKINGKWVITDKKTTGSIDYFNKATGKASDSHKDQINRYRVLLKKCYDIDAEFGCVIYISNRIEKDKRDKPAILSFKLKPVEETLEDMINKSNIIKDALSNKILPERTKCFLCDGMCDYASMCFTDERSSFD
Ga0209337_100056836F017420GGAGGMNTNKIKKVSVKFPNFVSKDSVEYEGKRVVLKLPQIQDVNNRMYSELFSKDSGMTTGAKHLPRIEGFNCTWRNDEKNPQFTIAQFTFASGEEKKVSKIIEKYGGTVVESRADLNQWQFDETNLSGNTYQVENVNETMRGMI
Ga0209337_10005685F081895N/ALYDKVKTIKRIKKLESNLFITFCHETDKELEIRHEKGILMHYLRALEKLKVEQSNDIK

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