Scaffold Ga0209337_1000568

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000568
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29887
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (44.74%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F017420	Metagenome / Metatranscriptome	241	Y
F040325	Metagenome / Metatranscriptome	162	Y
F047713	Metagenome	149	N
F056888	Metagenome / Metatranscriptome	137	N
F074009	Metagenome	120	N
F081895	Metagenome / Metatranscriptome	114	Y
F092887	Metagenome	107	Y
F097509	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100056811	F047713	AGGAG	MEIIGQGEVATLEIMKEMFGNSSEYMTQVKLSNMVTPEYLETFSDRQLKETIDIVVVTVFENLAIRVQDKHHASARMATIDNIQKNMLEWNGWKVIDIWHYECKELWKDKVNTKSRLELELAIKESSVD
Ga0209337_100056817	F092887	AGGAGG	MVISRTVRPKKKILTSIVSVEKSRRVSTRNRIINTLGIYKRGLPLTEIQYKGDISSMGNLHHTIKFMVRAGEVDKIKCPHCNSTELYKLHI
Ga0209337_100056821	F056888	N/A	MNVSEVLDIKGSHENSQKLVAGDKITIQSFKIKNVDEVGAEVVEIETTEGLRHSFGKTVIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEKEAEKTGRMMLCLSMFPPKN
Ga0209337_100056822	F074009	N/A	MGTKIKGKYAGQCKICGSDWKVGEDIFYQKDPKAICSDKECFEEQGGKFTPYSGQGTLTNTAGWGKTPIITKLPEVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE
Ga0209337_100056823	F007003	N/A	MLLMKLLIMIHYFSNIHYFTKNIDQKKYNDIIQRIIMINGHNGVSNSGYRAWQNFEENWTLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGSKVIYMFVNDVKNPFIIRQNVMPLGHELLHAIYQDAVGTFHITRKYDSPEGKAGTKSAAATVIVHDNWYGNKKTIKIWIRWGMIWLPITIPFIPIKEAKKQYEI
Ga0209337_100056824	F040325	N/A	MARRKIGNSHTTICVSWEDKELFRKFASFVKKTRTGNLYESDAVLFSKMLNHFKENNAIGEISNTTYPSKV
Ga0209337_100056830	F097509	N/A	MLKIDDINEEVYFQFRRSQMEAMHTERLGVIHVSDIIKPCMRNVIYRKTTPDTGMSTENTKSLYFGQAVHNNSQVAKDKKYHEMFFAYDYVRDESLTREEALKIPVDDPRHLDIIYGSADDVLKINGKWVITDKKTTGSIDYFNKATGKASDSHKDQINRYRVLLKKCYDIDAEFGCVIYISNRIEKDKRDKPAILSFKLKPVEETLEDMINKSNIIKDALSNKILPERTKCFLCDGMCDYASMCFTDERSSFD
Ga0209337_100056836	F017420	GGAGG	MNTNKIKKVSVKFPNFVSKDSVEYEGKRVVLKLPQIQDVNNRMYSELFSKDSGMTTGAKHLPRIEGFNCTWRNDEKNPQFTIAQFTFASGEEKKVSKIIEKYGGTVVESRADLNQWQFDETNLSGNTYQVENVNETMRGMI
Ga0209337_10005685	F081895	N/A	LYDKVKTIKRIKKLESNLFITFCHETDKELEIRHEKGILMHYLRALEKLKVEQSNDIK