Scaffold Ga0209337_1000173

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000173
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52096
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (78.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016673	Metagenome	245	Y
F020018	Metagenome	226	Y
F025517	Metagenome / Metatranscriptome	201	Y
F059458	Metagenome	134	Y
F063765	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10001731	F059458	GGAG	MIYLEDVKDEVNAMSVVPELEVQAIEATEAMVNKRNKINRAEADIKMVMKLCVVRKWKDPMNRLQQMLDRLGEAKAEFQVNLWRS
Ga0209337_100017316	F016673	N/A	MVSESSIEDTVIKSYLELYLRSLNESRSHKFITIIKTRMLELIKRKQLRNQ
Ga0209337_100017322	F020018	GGAG	MKMLQVTIWLNPDDETWYKGTFITTQEWLMIEKERISKSINKRVVIKTHENGSKALFREKIR
Ga0209337_100017327	F025517	N/A	MYGVNAKLSKADFKCHMCHSYKNQDVYIWGNFEILPKHPYQEYRICKKCAIREHGSKRVKLETIIDERTKQWLEKQRQ
Ga0209337_100017348	F063765	AGGA	MNYSLFDKLGQNIDITAGRNAKAPMHPPNTPVTRTPELEDVAKNKAPINMTGMKFTHSLIKHLDQLYSKMLAGEVAQIASEPKSNAKTKAIEGQTSALILEEKEAYFNPGNSNVTESL