Scaffold Ga0209109_10000391

Overview

Basic Information

• Taxon OID: 3300025160
• Scaffold ID: Ga0209109_10000391
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22947
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005347	Metagenome / Metatranscriptome	403	Y
F062537	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209109_1000039115	F062537	N/A	MELLLTRPVVVTLAVLGALLASAASLLQLRGYLNPTSARALNWAGYGCMGASMLLFALAGLWR
Ga0209109_100003912	F005347	AGG	MVILMLAALPASAQRAGDEVSLRLGGKEVPLDAALQGRLAALAREVLHRCGPNTEQHPSNFGLGAIGVQQRWQRLLEGSRLRVRFAAPFATESHLGGTLGVSEALIGLEHEDYFVGPDFTRHGDSIVEHLQCEYLPALELACLGGLAPFLPARYRETCAMLERGADGRIVMPPPDVAPSC