Scaffold Ga0209320_10022099

Overview

Basic Information

• Taxon OID: 3300025155
• Scaffold ID: Ga0209320_10022099
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3096
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013144	Metagenome / Metatranscriptome	274	Y
F028264	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209320_100220994	F013144	GGAGG	MRSAKKHITPIDMEIIYRAYRSVWTVLNHEKRLTDSDEAHELSDKVTRKLVEVALEGVIDLETLRERTLAEITRS
Ga0209320_100220996	F028264	GAGG	MSETLERMQKRARELARSGKFREWRSVAFELQFEPSLKEAFQWLHSASVEDAFQWLHSPAAKEELDRLCDEARNPSSRHGPEAA