Scaffold Ga0209645_1054241

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1054241
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1397
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10542411	F000720	GAGG	MTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPEKKQRELSTD
Ga0209645_10542412	F030928	GGAG	MKEWLKTLEAYTSFSILGFTIFICLIVIVVNCKYIIKLESTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD
Ga0209645_10542413	F083388	AGGA	MVGMLMQKRISNIEWVMTRCSPEFKEVWERKLEQLINRRVEMAYERMVENARSVH
Ga0209645_10542414	F004988	N/A	MVKLVETICPRCNGNGYIVVLDKDAFSKEIDCPMCEEEFMHLGGKVTTHNGYVMLPIEQTRKNVEGGRESIVKWSGETLPEKGE