Scaffold Ga0209645_1003009

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1003009
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7838
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F083376	Metagenome / Metatranscriptome	113	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100300910	F083376	AGGAG	MIRIYIDPETTTTTESLDLGRVLLGETKKYTMYMKNTDTEWAVHNIKFENTNPELRFEYPQSMEANEVKELNIYWTPKLDSRKPLRTEFKYSGDIYIG
Ga0209645_10030095	F037175	N/A	MIKYHTKNINKQFVSQTVIHTLANTGIKDLSGWLNKWDIHVWDLKDTNPQFFEHVQTTSGQRINPNMPSGVTGKYRMDLWLHDSNNDFKARENSDRIMHETCHAILINTPYFVAGVHDNVDNRFQANFWYWNKFRWSKFTLSIIDIRRYMIFVK
Ga0209645_10030096	F049294	AGCAG	MAGNLRYYALGAYTGLIALWTATGKIALDEASSIALLAPIAILIGADYIKHKDDSE
Ga0209645_10030097	F090244	N/A	MDVEARIFEKLDKIEDRINELCIRLTTMENEYNSHISDMEKKQANKLRRRDYTLAVMAIGLTIVEVCRTLGVI