Scaffold Ga0210020_1003486

Overview

Basic Information

• Taxon OID: 3300025148
• Scaffold ID: Ga0210020_1003486
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12196
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016112	Metagenome / Metatranscriptome	249	N
F021923	Metagenome / Metatranscriptome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210020_100348611	F016112	GAGG	MWGSIEKVRNICGITKEQINDIVIHDMLEQTDRKVRDKVYIFRRLTMLMNKIAANKIRFDVNKIGDGNRDTSIDDTDISIYRKNNGVYELFPIQKLDILSNEITFQTDIGENYQIIVEYFEDNFHFSIDTLSDASSLLAAAMCVRSLPLTGTDNNAKEYERRAKEIITRSSASFV
Ga0210020_100348619	F021923	N/A	MNLTDFFNNYEFIKKLQNHLTVDKGNLLNDFPNNNIEKSLNQLLLSPSNAYLSKKIIPQTFADMTWKFNLLEGQQTLTSPSPREFTLTYESQTSRSIFYYETPISGSCYVECDFVDVEPGTTNCIFLGNAENITSKTFLAVQTFPLSSFRGDKIGEGWIAIMEFDNSNIHNPNVLAWSEDIEPTGIFRLSKNTTTLKLHHNRTYSLGAKTTFIGEDLHAGFFSYAFASSKIKKTTFKNLSCGNY