Scaffold Ga0209322_10000443

Overview

Basic Information

• Taxon OID: 3300025146
• Scaffold ID: Ga0209322_10000443
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24139
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007903	Metagenome / Metatranscriptome	342	Y
F049365	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209322_1000044323	F049365	GAG	LERSPVAGKMYPITSDWVPVTDVLAIINRFEKHWKQHKSKKRDDAKLINEILGET
Ga0209322_100004434	F007903	GGA	VHMNSGGTDRLLRDYLEARFGAALDYFIIESQMSPDAKGDMGVTGTYRKGASDKKVFFTVTVNLASREVQNLQEYS