Scaffold Ga0209756_1078766

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1078766
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1486
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F053549	Metagenome	141	Y
F079212	Metagenome	116	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10787661	F101902	GAGG	MRVGNLVKRRDDHTHHGIVVEVGPRETALDHGGTVAKVQWNDGDLTCEFIKMLEVLSEGR
Ga0209756_10787664	F053549	GGAGG	VKVGDLVKWENALTDSMDHYQQQHGIIVQMSRTGHDTFSAQVLFTDGDLWWMDTHKLVVVNESR
Ga0209756_10787666	F079212	AGAAGG	MNPDEEKLIDRCIESHYNMIRHHRRQIIELSRQKIKDERCMECFDFRIINESGRSGEDGK
Ga0209756_10787667	F018286	N/A	NMQILTTFILVGMIDSFDAHFATVELNTTPASNGGPSVAVMPISAFPCDIYEGKVFYVVKMHEDQDATIVCQKDVNYEPRRRKTD