Scaffold Ga0209756_1041986

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1041986
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2322
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F005026	Metagenome / Metatranscriptome	414	Y
F018706	Metagenome	233	Y
F026871	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10419861	F018706	GGAGG	MVDRASVLGMSGTAATFGLSTIDTFLGIAVGAVTLVYMSIKLYQEIKKK
Ga0209756_10419862	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARQQKYEMEMARECRNNQFAIQFQQSLNSGPGGAFTRATRRMLALIGMCTFSFVTCITTVYPSVPLLTTTNITGEGKREFLFGLISFPAEQAPMVVTTGSISLFSCSVVLPMIIGFYFTPGGRT
Ga0209756_10419863	F026871	GGAG	MFAGVGVALSILAFFIKRNKWEIDDMKERLRYMEISHAGQCKDVEHLNKISEDRRRDVQKLFEKVEGK
Ga0209756_10419864	F001166	GGA	MATEVGDNVQVKANLAFMAKVIAVVGTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDAPITSDYQQFERLKYIEKELDRLRDKVEK