Scaffold Ga0209756_1018004

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1018004
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4210
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F012859	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_101800411	F012859	AGTAGG	MVRNRKGLAPWSLAREAGIESATVDGTIEIPQYVQPVLDTGFVDEKGDWKGAKSSDKDFIAFGTFPAIANGGTILAPSVNADGTWPLDMTGYNDIFIAIRVTNAGTYTMNAVMGPDSNSFANLNPVNAAAKLRFCGGFMADGDQFTDVLDDAAETLANNVWNILTIQNRAKNQKLLQFSLTNNSGNTSTIETAFMRLV
Ga0209756_10180049	F001227	GGCGG	MAAPLGETMVRRKVRRARRRKSFSINLLETGAGLAFLDAANAGTAAQSFIKGDINGGLKVLSSAFKTNKNDFIKIGVGTLAAKLVLGSMGGSKVLGSVGPLKLRA