Scaffold Ga0209756_1004122

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1004122
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11427
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034142	Metagenome	175	Y
F070003	Metagenome	123	Y
F084093	Metagenome	112	Y
F084211	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100412230	F034142	GGAG	VIKQFNVGDLVRFIRRLPSAQVSAAGIEAAERYTRQNMPYMHEIGLVVANDCVQGCVVSFPSRQTAVSTLNLEVC
Ga0209756_100412231	F084093	GAGG	VKPQVGDIVQVKEEHWPTVGLHGGLVTRLVQWPETPPLPLVDCVVFQDPNLINPVQLQTRYVEVISRA
Ga0209756_10041224	F070003	GGA	VDAVCVDWESVAMKVGDLVKFRRHNNSPHGIVLEIANLPESPHPSQPERSAAYVEWACKYTAAGNYQISILEVVNEN
Ga0209756_10041228	F084211	GGAGG	VKVGDLVEHSGYLGLIICANDFETLVRWLDDGTVEDADNYTIGLEVVSESR