Scaffold Ga0209756

Basic Information
Taxon OID	3300025141 Open in IMG/M
Scaffold ID	Ga0209756_1000468 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025141 Open in IMG/M

Scaffold ID

Ga0209756_1000468 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39503
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (76.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

39503

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (76.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	85
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028814	Metagenome / Metatranscriptome	190	Y
F036245	Metagenome / Metatranscriptome	170	N
F039872	Metagenome	163	Y
F060970	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100046810	F028814	AGG	MSMLIMLKEGGSLLIDTIGNKPIDEDIDLLPDSSSGGIEVDRQLMLWSDSGLALQYLDVDTLLLVGA
Ga0209756_100046813	F039872	AGG	MSNIGDLVDRVYREYLEPMDDLVSYSTLSTGVNDSVTSVVFDGDMLSIEEEDALDKGTVIEINQELMICTDLNAVTNTITVKRGVKGTAAAAHTAGDLIKISPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLIGSYSSPGTNNYLVSILSAVSQYTDFSAGSDTTGVNFSPVTCSLVELPNPFTYTDSDGVSRTITYSTGPSTVHAIQFAGIASGHTAHVTFKKKFIEPTAESDTLATVGLEDEYVPIIMAGVTAQMMSGRDIPTATADYISEQLAVSTYPVGSSNSIRNSLLQYQQLLMNQARKYLRAKYPEAVSVDGMVFGIQA
Ga0209756_10004682	F060970	AGAAG	MSNNNGYTNKEMLHFIRVEVQDLHKRIDYLHEKINKTPTRGEIVGWLVGLSSTAAFLNTI
Ga0209756_100046845	F036245	N/A	MGSTYKDSYKDRNSGEDMADLAMQKHLKDNGCVEYQDYLRIGTDPKENKLNLFWYATKILLVPDYILVRKGFIFFIEVKGTNKLKAEDYYKIQEMAFKGSKYKEVKVGIMYFAHKDAEPVWIDHNKLYDYWIDPRIPMKYYPELDFQGNKKAYKEIPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209756_1000468

Overview

Ecosystem & Geography

Associated Families

Sequences