Scaffold Ga0209634_1155177

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1155177
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 928
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F038864	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_11551772	F038864	AGG	MKIDKKLIVAVLELYKLDIVNREIKEHDQSLELLIKVNEQIKLIKEWKK
Ga0209634_11551774	F007611	N/A	MKKKWITVLDYETSRVYQYQVTINKHAEEFITFKGHRLSNIEWMEHSDSRLITN
Ga0209634_11551775	F001802	N/A	MKTIKHLKNNYLQLDKLIYRPYTVCELPANFGCINFNEKEGISEWFNYKGYTYLFEKMAK