NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1103173

Scaffold Ga0209634_1103173


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1103173 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1257
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007551Metagenome / Metatranscriptome349Y
F033503Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_11031731F033503N/AKSIQLRKDIMKLALAESATDCTIMCGTLFAKFNVSIHEQMAKNLKTTLQTFFDKRKVNDCYVQMSGTLPDNEYAYDFMPIVDFRHNGVGV
Ga0209634_11031734F007551N/AMIKGEEGFITAILTQSVEDAKYTGFNKQDLEHKIESINWIMGGDPQFKYYCKLLNIEPSYIQNKIKNDTTITSQQKMLLKPIVEKLLKSKKYQDNWFAINVEERI

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