Scaffold Ga0209634_1079785

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1079785
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1507
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014329	Metagenome / Metatranscriptome	264	Y
F042624	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10797852	F014329	N/A	MVQQNTKIMSKRNYSITRKKGEWYHAKVIDSYGSVFDNYFEHAHEANDWIYYIWENEKPPLTEEEEMDMLANAIWGCTKLDGELGLLKGNEDNLD
Ga0209634_10797855	F042624	N/A	MKKITRCALALSIIFSSCQKEDELSSRNWCSPTFENFDCNSPVMLGESGTVGFLPGDTDAQIVAKIKDLWNLPDHHVVFLDPETYNGNGGLGTARSINPEYLAFPLHISSMSDKWGHDYYEEYKQDKQAFLDKYTNGKETG