NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1068526

Scaffold Ga0209634_1068526


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1068526 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002430Metagenome / Metatranscriptome560Y
F003073Metagenome / Metatranscriptome509Y
F007346Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10685262F003073AGGAGMSKKLHNMTSDERIAHWENVREKERINRRNRIAKLSMEQRAAVIDINKLLDKVLAVALYPDMGGIRMVSAYDLQELSDAMDTLQWQFNLKD
Ga0209634_10685263F007346GGAGGMNDNEIRGIRLSQALKWSGQDIFEVASAAFEDANYHSFNEVFYAAWTEFQKELQDE
Ga0209634_10685265F002430AGGAGMITLNLPKKQVNAILVALDTEIDYLFDTHGRPDWETFPELAAMLMAYYTTRCKFDEDDCR

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