Scaffold Ga0209634_1068526

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1068526
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1677
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10685262	F003073	AGGAG	MSKKLHNMTSDERIAHWENVREKERINRRNRIAKLSMEQRAAVIDINKLLDKVLAVALYPDMGGIRMVSAYDLQELSDAMDTLQWQFNLKD
Ga0209634_10685263	F007346	GGAGG	MNDNEIRGIRLSQALKWSGQDIFEVASAAFEDANYHSFNEVFYAAWTEFQKELQDE
Ga0209634_10685265	F002430	AGGAG	MITLNLPKKQVNAILVALDTEIDYLFDTHGRPDWETFPELAAMLMAYYTTRCKFDEDDCR