Scaffold Ga0209634_1051107

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1051107
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2040
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F009561	Metagenome / Metatranscriptome	316	N
F076257	Metagenome / Metatranscriptome	118	N
F087245	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10511071	F009561	GGA	MTELKEEHLEVISKNKARKHEIDKMVEQLSDAKESVAVLGNAIECGFLHDKHSLILQEWIVEYEQLSEQLDTHLTEVRDH
Ga0209634_10511073	F087245	AGGAGG	MNEGMENLKEQENMNDSLFELNTLILDLRSKLSKSLQEVLKLRKDLDLEKEEHQLTQLKYESMKNNLDKVMTDKLNAARAAVEEIQK
Ga0209634_10511077	F003677	AGG	MVDEALYFFEKDVGKKVYEIEYEVTYVTKWQVLAEDRDKAFDVWLENHKLNMSTEDGNNTVCSYAKDYTKMGNVKEIAKIKYDSEDNGEVYADES
Ga0209634_10511078	F076257	N/A	NNEMDTILLEKKGKLDNAINDLEVKLENWKKVRKWNTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCKNLLNAGQSLATVWKTIDLEMSKEKINTSTIPKPEFLAITK