Scaffold Ga0209634_1040288

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1040288
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2386
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016322	Metagenome	248	N
F017401	Metagenome	241	Y
F081761	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_104028810	F017401	N/A	MVNIGMAVTAGQPQVNKDNELCKKLGTLARTDAHIPQCVDRKSSNFLTILLEFIAALSIMLGLIIAAWCLAVIS
Ga0209634_10402882	F081761	N/A	MTTDKVIPLHPPQSETDKQWAALERQQQQIREQLEKILERKK
Ga0209634_10402889	F016322	GGCGG	MIRDTNHPLFDEIAYAHVEARARVLADEANRVGWEEIVDGSAQALRAMMLSMNTKRLRNDTFYAGLVDGQLGVIVRKGAKH