NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1040288

Scaffold Ga0209634_1040288


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1040288 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2386
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016322Metagenome248N
F017401Metagenome241Y
F081761Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209634_104028810F017401N/AMVNIGMAVTAGQPQVNKDNELCKKLGTLARTDAHIPQCVDRKSSNFLTILLEFIAALSIMLGLIIAAWCLAVIS
Ga0209634_10402882F081761N/AMTTDKVIPLHPPQSETDKQWAALERQQQQIREQLEKILERKK
Ga0209634_10402889F016322GGCGGMIRDTNHPLFDEIAYAHVEARARVLADEANRVGWEEIVDGSAQALRAMMLSMNTKRLRNDTFYAGLVDGQLGVIVRKGAKH

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