Scaffold Ga0209634_1006174

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1006174
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7675
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008026	Metagenome	340	Y
F020911	Metagenome	221	N
F062251	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100617411	F062251	N/A	MQTLNKIMNKIIFTAMFIAAIITWTWMIFAWIIAIIGG
Ga0209634_100617412	F020911	AGGAGG	MSEEEKEEGKSYTTSFRLNESANARLMTFCELTGMRKSEVVKAAISQFIAPTIQNANVIPPYYNPRAHTCVDNNIISNDIMKNNTEAKIKDAKKEQTHAWFQAFWEVCKNQQFARRVVKTIRHNWDALAELDPKIVADKYNEHFSLKGNYAKHPNSWLNDGGYDNVVDNSVSTHGLNFDVTMKHPDD
Ga0209634_10061745	F008026	AGAAG	MGRNQGKKKYLITSKKALKLMGYKSQTSLDQFHEDEGLTCYIIDGMTCRGGRGFAWDKREINKWLKTEGRDTEEWLID