Scaffold Ga0209634_1005797

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1005797
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7968
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051962	Metagenome / Metatranscriptome	143	Y
F087436	Metagenome / Metatranscriptome	110	N
F097115	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100579713	F051962	N/A	MTKKQRRTEIIKNLSHTIETESAKPNGNMELVAKLVKKLETIKDGTFVSKMRKRRV
Ga0209634_10057973	F097115	N/A	MEINYILLGIVSSVIVFLLGYAVVVIFNLKNRIDYLESFLEDTDEKIDIVVSKSNQHLISQLEILEGKTEGNQKDIIALLDSRLDKLEYKFRADVTSGAEIVKVIEESQKSNERLDEFIRTFQAQ
Ga0209634_10057978	F087436	N/A	MNKLKNKFGKYFEFKNTTNGTDYFLRGLATILFLIPIGLFVGIGLAILNSQPVIAAILIGLASLILVPMIWFSLATSYKRINAFFPGKAGKGGKIAGWLVAVTFIYSFILEGFNPNNGMAQLNESAGTLPNGDYITYLVLTLPYLVWSFYLLFGNSKVKKHIG