Scaffold Ga0209634_1005696

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1005696
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8047
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100569610	F029123	AGGAG	MSYEVWFGKDGKWFGYHSFKYRMEAVDCELKYLNIFKDLTVEIRRREHNAY
Ga0209634_10056963	F004493	GAGG	MRNSVTKNNALDFTNDEWSQLIDGNGLLLMWFIEWNKRDKQGVDIQDFFKLKYRQSAGGDPWPMKNAKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHTIVRMD
Ga0209634_10056968	F005813	GGAGG	MKLYKNSNGVWAGTQADARKMCGKDYTAVDVPVDKPSLLKFLNFNQVGSYTSNDKTETHYEVYIPNENKEDSLNKKAMSWFRWAHDCMCRGQYEDAKEMLRKGLIDDRTTTSDG
Ga0209634_10056969	F006217	AGGA	MIELLLAMVEDTNQIHKYCMDKHDHWTGRAACVQELRHAQRKMEVEELRQFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKKEKC