NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209634_1005295

Scaffold Ga0209634_1005295


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1005295 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8404
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038864Metagenome165Y
F061291Metagenome / Metatranscriptome132Y
F089528Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_100529512F061291N/AMKTKNELEQAIVMHEEALESSRMSVLADTQDLESAKKELASFNKPVLTGSQLDDIQEAIENAVCQFDFDDSDNYNKEFELDYDGRVQLSHLEFENAQELIESIVEKVHKLFVEVEELDTTKPDNHV
Ga0209634_100529517F038864N/AMKINKKLIVAVLELYKIDIVNREIKEHDQSLELLIKVNEQIKAIKAL
Ga0209634_100529524F089528N/AMYEAIAHWNEYQKQKQAKQKMDKFLNKLIAKNGVTNI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.