Scaffold Ga0209634_1004946

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1004946
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8735
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011797	Metagenome / Metatranscriptome	287	Y
F051268	Metagenome	144	N
F055859	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10049463	F011797	N/A	MCNLKIKNMIDVMNTFIAIILSVVALTPIFLLVILLNKSKVQSSGVDPSIIKRLEDMDTTIASDTNNALDQISAKIEDFEARLADLEDQRTTVSGFKNKK
Ga0209634_10049465	F051268	N/A	MKMGEKNELLKIVLKRLKIAKLYIGESIINAFPKINLKSRIKEEKETVELILEEANQYGLRYEVDEFAKKFLKEDPTLSDLEAYVMAYNEWIK
Ga0209634_10049467	F055859	N/A	MENLILQLQTLLDEIEYEELGFTDVKEKLQEIVDDANNAFDVDDYIEDEINY