Basic Information | |
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Taxon OID | 3300025138 Open in IMG/M |
Scaffold ID | Ga0209634_1004640 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9034 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010460 | Metagenome | 303 | Y |
F071137 | Metagenome | 122 | Y |
F079203 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209634_10046402 | F079203 | GAG | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAHP |
Ga0209634_10046404 | F010460 | AGGA | MDNTTIPTHAMIKNLTEYIVDGMTLPELKQFVYDDVYSIMLEDREVFYANLPVECEPEDFAKETD |
Ga0209634_10046407 | F071137 | AGGA | MGSDFTLATFPYFDMTDDRRERFRELIVNLPASETDEFQDWYGLDDEESYNLEELLEDIESSCSIVGRETTTITTYNDKGERYELNVTGGMTWGDPPTDAYDAFNRASFFENVYNLAVDFSVEYSKMYT |
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