Scaffold Ga0209634_1003441

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1003441
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10675
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017050	Metagenome / Metatranscriptome	243	N
F018269	Metagenome	236	N
F096045	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100344115	F017050	AGGA	MSKLISGYWWAWKEIEAGKKSMQTLRKFYPDADLFINVDYEGDVDGYTKVGEELNATVTRNNFQLGYCGDFGDRDIGYKHWTKEKAVEWLRGVYSACKKTDSKYMMLFEEDDFVLKKISILDTEFSMAIHPTYPSPTGRYRANRIPKQFLDYSKSIKRIKIGKNSKSMNGIGGCPGYASGGGTIFNREHYIDSYENILDKFTDVYDEFCKIKKIFGWQDFMFQYIMMLGGYEIIQNHNLCELWEVPNFEGFEILTGCKDPDLIKL
Ga0209634_100344116	F018269	AGAAG	MKIGINLVGVSYNNAKEGGRLRNYEDAIENFHTYIVEPLREKGHEVQFYLYSYENEKQDKIVNDYIPCIKSQFVKPDYNKLGGGASVSEGYKVMSVSYLNSLEQLKNEDLDLVISTRYDIKFFQNPFEVYDYDFDKMNFLWREPEFMDLPIVNDTFLVFPHKMLDNVKDSIIEMEENPPHGTNVAMHNWYLPMVNQVGEDKVQWVDDRFATALENKLYILTRKG
Ga0209634_10034414	F096045	AGGAG	MITLKSILEDAKINTKIDEANDTYFKSFTQAVEYARKVTEKRGFTIDEDDWQTQIAFGGKYTRSRPSKGKTNSFTVGLLKNGKPQRKSLQISVFGMPSGNYELTQYIN