Scaffold Ga0209634_1002502

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1002502
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12839
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F046021	Metagenome / Metatranscriptome	152	Y
F072747	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10025021	F072747	N/A	DEITLKSIQLLRDCDPNLDEMGSMDKFISHQTELAKMRDQYVSYSNHPQAEKMKKRLEVLEESSQAFTWVYFMMMQFKREKVLAQANELEMANAVIELKHELDLLTKLNDDE
Ga0209634_100250220	F009843	N/A	SNNRYILTINKHKMKKVELGGQLRPIRFSYLCLKQICNKLGLKLNELNKLGTEIDHIGVIAYFGLKYGAKKNGEKFNYKISDIEDWIDNEEFSKINEIFESFQLDQPQEEGK
Ga0209634_10025023	F019648	AGCAG	MILASAIVVIVDFKKIDMNKKELNLLDQFASKYKIDCVPSEGKYDFWDFTYEWDNRKFYCEMKQRNFSLDFAKKKYSEGLLLEMHKYERILRRTKNEKSAQGLYINFFSCGSILVFNLNKTKIDNWFWRTMPESTEFGRKSFVYKYITFLDYSKGKVLYI
Ga0209634_10025024	F046021	N/A	MKKLTAKYYDNKSIRTKIDKLLLQNCSNVANSDTGSRNDIGGDKEVQDAWDEIQQKIKEIDPVFYEIIKSR