Basic Information | |
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Taxon OID | 3300025138 Open in IMG/M |
Scaffold ID | Ga0209634_1002066 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14237 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (90.48%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020385 | Metagenome / Metatranscriptome | 224 | Y |
F063160 | Metagenome / Metatranscriptome | 130 | Y |
F071405 | Metagenome / Metatranscriptome | 122 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209634_100206619 | F063160 | AGGAG | MNEYIVILCDELGDDFRVVIEVPDLVENVTEYVREQYPESSIVYITPKGF |
Ga0209634_100206620 | F020385 | AGGAG | MKPSFREVLAERQEYLDMLKQNGDLYTRIFLEDTFLYQMGDSGLAPLTTAQHSTMKKWKEESAQ |
Ga0209634_10020666 | F071405 | AGGA | MHPSYLGWQIDWPVFVKRSFTSDGKQWETQDHYNWLNRGIGSDAVASLYVQGFIHHNRELEKQAKVGDRLSELAGPQLDKLIGLLNAEVKANTNSNTEYTEKKVKQSKIDAKQRALLRSYLRNNRWIEDKFFEIRDGILED |
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