Scaffold Ga0209634_1001899

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1001899
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14972
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025997	Metagenome / Metatranscriptome	199	Y
F043378	Metagenome / Metatranscriptome	156	Y
F093837	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100189913	F043378	GGAG	MNKFIQNLFKTGKNRTVKLSDRTSFSFKGHWTGVQYGTVIDQFHVGEFSSAIYMIVAEFDSNEKEVMQLSVVARPGEATASIFGRSSINQELITLSVTVDDSIVKIKADPKSSVYAGTKVQFHATYAETIHQLQAPALIVADSTEEASGINTFDATTETFDANDVTFDKV
Ga0209634_100189915	F025997	AGGA	MAIVNDKFSSQFGFESPSFTVDTAGKIIAPTIDVETILLGGAPFVQYVPPADDGGDDSGTQVSNTFTSLSVTGTFKTVYLGNTGLSVVDGRVALNSSASGAPGTIDNVDIGYNSPGQIKAYGIDMTTAPDSTASNINADGASINGDVKVANNLLMQTDPTIGTHATHKKYVDKTAVAFAVAFGV
Ga0209634_10018995	F093837	GAGG	MSFENILNTAYQGDKDFWFLCHAGRIPDYWISKDKYKDYKEFIPLFDKPKNQHVDYGGAVIQYDDDFSWPHKSTDYIDFLKNSIAKFQFKNIKFKKCWWLTYPPNSFSGMHTHEDREQRTMTCVMFLNTIALDAKTPLNGKLKAITMNPVTGELVSDMIKCIEGDVVIMDGKVYHGVYPTLEERKVFVVDFTYDKG