Scaffold Ga0209634_1001724

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1001724
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15848
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F015148	Metagenome / Metatranscriptome	257	Y
F023952	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100172419	F023952	N/A	MANEIYSKSWWGDGVCDNTVGWGLIYKPYAGCSAVDGLLVTLQARATYYENVTCTTATLTELENIV
Ga0209634_10017242	F015148	N/A	MVNLKQNIMDWYSPPEYKEYECTECGADIDKPGVCSGTCHEASMI
Ga0209634_100172421	F000751	N/A	MNIYKTNFPTEQEGKDYLLSIGVLIETDGEIAFAKETAAVVYIGKVVKIPATYDKDGNIITPAVYYPGYAIDVMSSLVLDFGAFMVYPVEAAHSFYGYPRNAEVPK