Scaffold Ga0209634_1000154

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1000154
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53291
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (83.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F032992	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100015440	F019646	N/A	MFNTSKNFEIVYSSDCCGASVHSDADICPTCYEHCEVIEDRTDYDCSEAVHFQASLDFYGAG
Ga0209634_100015444	F018906	AGGA	MKTKVNPLKLNGTRFNSQAHKEQGRYVKHYYFSNGLGASIALHDGTYGGQHGYFELAILKYQHGTDPYTTNEIIYDTQINHDLGCVDVIGWLDFHEVASKLQEIRNYNTGDYNYNVK
Ga0209634_100015447	F010910	GGAG	MLTIYTIFGIMVGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIYEIR
Ga0209634_100015452	F032992	GGAG	MNNAMDPNFRYYDCNNIIDETTGEEQDLTIMVAVPKIDLSTAENRQENIVAISGIVEEQYRRGVESFSYKEYTG