Scaffold Ga0209336_10102806

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10102806
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 805
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053631	Metagenome	141	Y
F066150	Metagenome	127	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_101028061	F053631	N/A	VAICGGQMIRAIYFALCFGIALFGLFVITQINLSIGLSVFALFIVKFLLMLPTYQEVK
Ga0209336_101028062	F066150	AGGAGG	MKIIHNYELKEMGEPIKETDCWLFFEKGKVAKHTIESFYFENFRKLLAFKKYQPVNNTIN
Ga0209336_101028063	F089429	GGAGG	MKAKDLNIYSIFSRTYKKKMFSFMDFGEIGRLKKFKTIKQVSNVYQFPIHKYYNQKRRVK