NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10017183

Scaffold Ga0209336_10017183


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10017183 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2666
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041446Metagenome160Y
F097474Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100171831F097474N/AMVDSTIKFNLINNKSFHNKLERKLLDEPVDASNSLFDGLSLDLDGKCYYPLFLREPFSLKDFDFCKLIDPEHLQQLKDREIIPLVCMLSESWKLFNFEPNRIFRNSAYFNIIDQLEKNNIKEEDVVWLTCDKYMRQDPRIKAEFIHFDFFLEQQKVLKNKFLPLTKIKHRYLSMAQGVPRHHRYAMTYQLYKNNLLEHGAVSC
Ga0209336_100171833F041446GGAMNNRVIKLKVIEDEIINEYELVDAITDPTEGSLEILIDEGPDLSMIKLFGKSFVESLNMLTDNLGIPKKIIKIITHNLIQDCSVWPNIEIQHPVEYFTAADRFEVPLDKKIQKHFGLFVGTSRWHRLYMAGMMHGLYKDKTMLSFWQHHLNNSLPANLRMDDVMLKDANESVREHMINFVKQLPLHLDPNDIKLNLNTGADITRGDWETPYEILPYYNSIFVDIVCETWHEGQCFLPNEKTGRPIIARTPFIAYAGKGFLKNLRKIGFMTFDRWWSEEYDDHEGVQRIQHMLKEIKKISGSSVDRLQEIHQEMLPTLQHNYELIKTLTPEVMLDNLS

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