NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10003123

Scaffold Ga0209336_10003123


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10003123 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7706
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019907Metagenome / Metatranscriptome227Y
F033254Metagenome / Metatranscriptome178Y
F035957Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100031233F035957GGAMPKYYKDCTLKEMFKYHDHTYMMSDDNKAYENGRHQRDMLEEKVKASGGWTKELCKLYNKYAPNDSMFQKDFEWISKYSK
Ga0209336_100031235F033254N/AMNRKHTHEKLWSFADEHVIDGMIYSHELDKYVTIEEYTDVYYGTL
Ga0209336_100031238F019907N/AMYNQSALIRIAARLFPEKNVFQLTKLEQREVLAIYREYN

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