Scaffold Ga0209336_10000885

Overview

Basic Information

• Taxon OID: 3300025137
• Scaffold ID: Ga0209336_10000885
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15069
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (60.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018014	Metagenome / Metatranscriptome	237	Y
F033992	Metagenome / Metatranscriptome	176	N
F102084	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000088510	F033992	N/A	MAHEYDLTEQSDLDMLDEVDGEYYNWDQNHSGYLWLTDACVDKYGLVRGMDVEPIDWENLYKDDDYYDEYKERGLKWDFYIQQYASVHDKDGKYLRDCTYDDWEVCKANGIKEEMLSDEGCEVMGWCDG
Ga0209336_1000088524	F102084	GGA	MKIESAILIVKNTDKDTSNDINSEKTNTQLMISPLPNLVTTGLIFLTVFAIITAGYIHGHMNISAVYKTLNP
Ga0209336_100008859	F018014	GGA	MIVNLTKNEIKHLVYLLGRGDGDHPELNQNLLNKLGSLIEVCTCKEKDSETEQ