NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209498_1054259

Scaffold Ga0209498_1054259


Overview

Basic Information
Taxon OID3300025135 Open in IMG/M
Scaffold IDGa0209498_1054259 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1800
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Hawthorne, Nevada
CoordinatesLat. (o)38.7Long. (o)-118.7Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007025Metagenome / Metatranscriptome359Y
F065739Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209498_10542591F007025GAGGMIYVDFFSNSCCKGTELLEGWYWYQDDGEDVGGPYENQDAAIEAAEKGTGWAYPYWE
Ga0209498_10542594F065739N/AMTRINHTVEQLTTADSYTSFNGLNTISLTVTVPDWHEPFPIQTRMGAANPRKLELNGLLHVCKAWYINGPVADQWSISTLNGAIKVPAGTRIETEELPEVWEANSKPSDPGKQEWFAYNNGRTAFC

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