Basic Information | |
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Taxon OID | 3300025135 Open in IMG/M |
Scaffold ID | Ga0209498_1010178 Open in IMG/M |
Source Dataset Name | Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5173 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Hawthorne, Nevada | |||||||
Coordinates | Lat. (o) | 38.7 | Long. (o) | -118.7 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005382 | Metagenome / Metatranscriptome | 402 | Y |
F013505 | Metagenome / Metatranscriptome | 270 | Y |
F065739 | Metagenome / Metatranscriptome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209498_10101783 | F005382 | N/A | MATALKPQTKTEIVKRFIFDAGSSIVSVEFIKADGTLRKLQFNPRDTQEIKGTGNALKKPSIVRCRDFTIARNEGQGAWRSFDCERVVCIKANGITSYLF |
Ga0209498_10101785 | F013505 | N/A | MHRTIEGHRESSYLAKLEADRQAQHSGYGTRRYHCGDGTIKWEAYGWERITELTMHETSYGLFDHKWQAEQYFFSIVNG |
Ga0209498_10101788 | F065739 | N/A | MTRINHTVEQLTTVDSYTSFNGLNTISLTVTVPDWHEPFPIQTRMGAANPRKLEMTGLLHVCKTWYLNGPVADQWTISTLNGPIHVPAGTRIETEELPEVWEANAKPSDPGKQEWFAYSNGRTAFC |
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