Scaffold Ga0209498_1010178

Overview

Basic Information

• Taxon OID: 3300025135
• Scaffold ID: Ga0209498_1010178
• Source Dataset Name: Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5173
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Hawthorne, Nevada
• Coordinates
  • Lat. (^o): 38.7
  • Long. (^o): -118.7
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F013505	Metagenome / Metatranscriptome	270	Y
F065739	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209498_10101783	F005382	N/A	MATALKPQTKTEIVKRFIFDAGSSIVSVEFIKADGTLRKLQFNPRDTQEIKGTGNALKKPSIVRCRDFTIARNEGQGAWRSFDCERVVCIKANGITSYLF
Ga0209498_10101785	F013505	N/A	MHRTIEGHRESSYLAKLEADRQAQHSGYGTRRYHCGDGTIKWEAYGWERITELTMHETSYGLFDHKWQAEQYFFSIVNG
Ga0209498_10101788	F065739	N/A	MTRINHTVEQLTTVDSYTSFNGLNTISLTVTVPDWHEPFPIQTRMGAANPRKLEMTGLLHVCKTWYLNGPVADQWTISTLNGPIHVPAGTRIETEELPEVWEANAKPSDPGKQEWFAYSNGRTAFC