Scaffold Ga0208299_1128081

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1128081
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 823
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004165	Metagenome	450	Y
F014329	Metagenome / Metatranscriptome	264	Y
F101134	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_11280811	F014329	N/A	SNKMSKRNYSITRRKGEWYHAKVIDSYGGVFDNYFEHAHEANDWIYYIWENEKPPLTEKEEMDMLANAIWGCTKLDEELGLLKGNEDNLD
Ga0208299_11280813	F101134	N/A	MAKLVEKNVAELIMVGMIAMILLSSCGTGYCIQSEWATPLSKRYSKTCN
Ga0208299_11280814	F004165	N/A	MSKLNNKQKSKIRREVDLDLGVKAPKTIVFKSKKIYSRKIKHKKYE