Scaffold Ga0208299

Basic Information
Taxon OID	3300025133 Open in IMG/M
Scaffold ID	Ga0208299_1002867 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025133 Open in IMG/M

Scaffold ID

Ga0208299_1002867 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11279
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11279

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	100
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

100

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F029447	Metagenome / Metatranscriptome	188	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_100286710	F042621	GGA	MENKEKEKLQWIKGDKIGAVETINTTEGDWTVFDSGGRISTNLIKEFLQPVIGTPLDFSNTPTQPPTIKKGKNKTKASKSPTSSPIRTLFDKQKKNDKIKLNLTFPIEVPKKDIYEIISSSFDSVEVNSELESFIQEQISQDFIKDSLIQSIKELIKTRYDIN
Ga0208299_10028674	F029447	N/A	MNVKSLTLKNRLIIDKSGEGYWDLTAPSFIYESDLGVKALHYVMLDQIGRIDKISEIYFGSGEYIDAICVVNNIFNPFSVNEGDILVIPNLSRKDLVYKRPDPASRPNEAQEAYVDTGRQSEKDQSRIQRLIEKAKGSESGVDQPMPPNMLQPGQESKTYEGGKIKLGTNLPSRSTKAN
Ga0208299_10028677	F008190	N/A	METRIEFNFIYSKDAVKVKSFLGTVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVFDRNTSSIFYVLGNLNEPTVEGIKTYVESLTEREIKYNIYHSPDINVNGSAQLFENVIEFE
Ga0208299_10028678	F059985	GAG	MIKIVLEPARNGVIKRVIDDNHGGGREQWTSTDVFESNDEQRNKYEYIMRFFFELCDDIGLECGNKFEKEVLRLKTEWGTHYEPNKKEIESKIKELQAEIDLLTEWKQG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208299_1002867

Overview

Ecosystem & Geography

Associated Families

Sequences