NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208299_1002867

Scaffold Ga0208299_1002867


Overview

Basic Information
Taxon OID3300025133 Open in IMG/M
Scaffold IDGa0208299_1002867 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11279
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008190Metagenome / Metatranscriptome337Y
F029447Metagenome / Metatranscriptome188Y
F042621Metagenome / Metatranscriptome158Y
F059985Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0208299_100286710F042621GGAMENKEKEKLQWIKGDKIGAVETINTTEGDWTVFDSGGRISTNLIKEFLQPVIGTPLDFSNTPTQPPTIKKGKNKTKASKSPTSSPIRTLFDKQKKNDKIKLNLTFPIEVPKKDIYEIISSSFDSVEVNSELESFIQEQISQDFIKDSLIQSIKELIKTRYDIN
Ga0208299_10028674F029447N/AMNVKSLTLKNRLIIDKSGEGYWDLTAPSFIYESDLGVKALHYVMLDQIGRIDKISEIYFGSGEYIDAICVVNNIFNPFSVNEGDILVIPNLSRKDLVYKRPDPASRPNEAQEAYVDTGRQSEKDQSRIQRLIEKAKGSESGVDQPMPPNMLQPGQESKTYEGGKIKLGTNLPSRSTKAN
Ga0208299_10028677F008190N/AMETRIEFNFIYSKDAVKVKSFLGTVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVFDRNTSSIFYVLGNLNEPTVEGIKTYVESLTEREIKYNIYHSPDINVNGSAQLFENVIEFE
Ga0208299_10028678F059985GAGMIKIVLEPARNGVIKRVIDDNHGGGREQWTSTDVFESNDEQRNKYEYIMRFFFELCDDIGLECGNKFEKEVLRLKTEWGTHYEPNKKEIESKIKELQAEIDLLTEWKQG

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