Scaffold Ga0208299_1000204

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1000204
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56973
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030245	Metagenome	186	Y
F084850	Metagenome	112	Y
F106100	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_100020418	F030245	GGAG	MILLLLSTALAEPLMVHLDAGETAPFDGRLMNDEAVANIIAGREMSIEQCEIQKELALSLTKAELQLKIDYLNAELETEAAKNTTLLELRDQEISSLRKEIKPNKTMWAFFGGFLLATGTSLGTYYAVREIDNANN
Ga0208299_100020420	F084850	N/A	VETRRVIMTLTWAKIKLWCFHNWRILVIVGAIVLAYLLGGKKVKALENQLQMARELYKNERDTIEGASSKKTEMQTEANVKYLRAIEIANKTAMESEDQAELIKAERVRRLVEINKDNPEEIDRILSEEFGILVMDPKDKS
Ga0208299_100020426	F106100	N/A	MTWPIQLSSLCLTFRFDNNYLTRYIIYYHALGGHMDMITVLIPGGFKPPHVGHYKFFMHYINNPEVSEVRIFCGERQRKVGDDFAVSIEQAEAVLRAYGILDNPKVIYQRASVRKTLNGHYTNPFADVYDWAEENHDKTENQISLGVSSKDTGYQSGFLSYFESYVNIVKIKHSYEQEDFISATEFREALAAGKPIGKFIPDHVNEEEIKKIFS