Scaffold Ga0209232_1070556

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1070556
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1228
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040924	Metagenome	161	Y
F046990	Metagenome	150	N
F084450	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10705562	F084450	GGA	MVWVLATLRKENSMTEKEMIEAWVKKNKPKRYTHGERPEGVEPPTISNWGRGRRKKSKAESQAEKDAEKG
Ga0209232_10705563	F040924	GGAGG	MKTKMVYLTVAVEIDAEADEREVMENCDYFFDSSEIVSAVIEEIFTEDQMIDKNEQANVGQALYGLGSSNFA
Ga0209232_10705565	F046990	GGTGG	MTVIRRRLKVGELVSVHAEMDDIDDWSKSKGLAIVLDTDPDPERPGLIEIRYTQARGLPEEQLPVRKLINHFSCTRVK