Basic Information | |
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Taxon OID | 3300025132 Open in IMG/M |
Scaffold ID | Ga0209232_1070556 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1228 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040924 | Metagenome | 161 | Y |
F046990 | Metagenome | 150 | N |
F084450 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209232_10705562 | F084450 | GGA | MVWVLATLRKENSMTEKEMIEAWVKKNKPKRYTHGERPEGVEPPTISNWGRGRRKKSKAESQAEKDAEKG |
Ga0209232_10705563 | F040924 | GGAGG | MKTKMVYLTVAVEIDAEADEREVMENCDYFFDSSEIVSAVIEEIFTEDQMIDKNEQANVGQALYGLGSSNFA |
Ga0209232_10705565 | F046990 | GGTGG | MTVIRRRLKVGELVSVHAEMDDIDDWSKSKGLAIVLDTDPDPERPGLIEIRYTQARGLPEEQLPVRKLINHFSCTRVK |
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